"To aid scientists as well as students in their analysis and study, I have a here a list of some of the most capable free and open source Bioinformatics software for Linux:
"Bioclipse
Based on Java, the Bioclipse project is a visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP). As any RCP application, it uses a plugin architecture that inherits basic functionality and visual interfaces from Eclipse, such as help system, software updates, preferences, cross-platform deployment etc. Via theseplugins, Bioclipse provides functionality for chemo- and bioinformatics, and extension points that easily can be extended by other, possibly proprietary, plugins to provide additional functionality. The first stable release of Bioclipse includes a CDK plugin to provide a chemoinformatic backend, a Jmol plugin for 3D-visualization, and a BioJava plugin for sequence analysis."
